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Welcome to the Rosetta Commons GitHub Organization!

Rosetta Commons drives innovation in biomolecular modeling and design through cutting-edge computational methods and shared software. Our global community of scientists collaborates to advance open, reproducible science and accelerate discovery.

This GitHub organization hosts the tools our community has built – from the original physics-based Rosetta software to the latest ML-driven methods for protein design.

What you'll find here

  • Physics-based tools: The original Rosetta suite for structure prediction, docking, and design
  • ML-based tools: Community-built deep learning methods developed over the past several years
  • Support resources: Documentation and community guidance for every experience level

Getting Started

Not sure where to begin? The Software Download page has an overview of all available repositories with their support levels, so you can find the right tool for your pipeline. For broader context on our organization and mission, visit the Rosetta Commons website.

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  1. rosetta rosetta Public

    The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.

    C++ 484 179

  2. PyRosetta.notebooks PyRosetta.notebooks Public

    Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

    Jupyter Notebook 714 173

  3. RFdiffusion RFdiffusion Public

    Code for running RFdiffusion

    Python 3.1k 657

  4. binder binder Public

    Binder, tool for automatic generation of Python bindings

    C++ 370 72

  5. foundry foundry Public

    Central repository for biomolecular foundation models with shared trainers and pipeline components

    Python 1k 205

  6. atomworks atomworks Public

    A generalized computational framework for biomolecular modeling.

    Python 465 57

Repositories

Showing 10 of 58 repositories
  • atomworks-studio Public

    Contains tools to visually interact with AtomWorks-based models.

    RosettaCommons/atomworks-studio's past year of commit activity
    Python 6 3 0 17 Updated Nov 11, 2026
  • RFD4-Proteina Public

    Generative biopolymer design with rich conditioning.

    RosettaCommons/RFD4-Proteina's past year of commit activity
    Python 582 BSD-3-Clause 85 14 15 Updated Nov 11, 2026
  • tmol Public

    TMol - Rosetta on the GPU

    RosettaCommons/tmol's past year of commit activity
    Python 123 BSD-3-Clause 15 4 9 Updated Nov 11, 2026
  • rosetta Public

    The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.

    RosettaCommons/rosetta's past year of commit activity
    C++ 484 179 28 31 Updated Nov 11, 2026
  • atomworks Public

    A generalized computational framework for biomolecular modeling.

    RosettaCommons/atomworks's past year of commit activity
    Python 465 BSD-3-Clause 57 18 6 Updated Nov 10, 2026
  • frustraMPNN Public
    RosettaCommons/frustraMPNN's past year of commit activity
    Python 18 BSD-3-Clause 3 0 6 Updated Nov 10, 2026
  • foundry Public

    Central repository for biomolecular foundation models with shared trainers and pipeline components

    RosettaCommons/foundry's past year of commit activity
    Python 1,049 205 88 (1 issue needs help) 18 Updated Nov 10, 2026
  • RFDpoly Public

    A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.

    RosettaCommons/RFDpoly's past year of commit activity
    Python 33 4 2 0 Updated Nov 6, 2026
  • RFantibody Public
    RosettaCommons/RFantibody's past year of commit activity
    Python 549 174 78 13 Updated Nov 5, 2026
  • documentation Public

    Documentation for Rosetta Applications. The source for the Rosetta documentation wiki.

    RosettaCommons/documentation's past year of commit activity
    PostScript 11 5 2 15 Updated Nov 3, 2026